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Related software.

• The Accessibility Toolbar for IE gathers a number of public web services together with resolution, image loading, toggling css, and a nice collection of accessibility resources.  Most of these functions are available to the Mozilla power user ("V" a page with mouse gestures to validate).
• WebQuilt is an academic project offering a proxy server for collecting clickstream data and visualizing the results.  Somewhat limited in usage and not polished for distribution, but quite nifty if you have some Java familiarity and a very impressive presentation component.
• The NIST Web Metrics Toolkit
• Site instrumentor, visualization, card sorting, and navigation tree generation.
  

For a list of card sorting tools, please visit uzilla.mozdev.org.  A promising open source effort has been started at SourceForge for doing web based surveying and browser control via a proxy server solution - OpenWebSurvey.

Teaching Usability & User Centered Design:

• EasyChart from IBM, "demonstrating poor design"